Scaffold Ga0208600_1032735

Overview

Basic Information

• Taxon OID: 3300020550
• Scaffold ID: Ga0208600_1032735
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 08OCT2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 811
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022399	Metagenome	214	Y
F053253	Metagenome	141	Y
F084156	Metagenome / Metatranscriptome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208600_10327351	F022399	N/A	IKYQSIYSKNGLEVFVNPEDYWADYKVSLNGHHAKKFYGETAWMDVTRFVHDQAVEFWDFNTDGIHRQWQQDIMAELESRFANE
Ga0208600_10327353	F084156	GAG	MLCPMVYENRNTIMVTDLCWYDTKQGDNCQWECSDIPGSFYCKNCNGLRVWNRFAQAYSYYVREGHYGF
Ga0208600_10327354	F053253	GAGG	MDFDLDTPIEKILTDMLDKVEGHVGDCDCVNCNSLEVLAYMIKV