Scaffold Ga0207942_1001606

Overview

Basic Information

• Taxon OID: 3300020549
• Scaffold ID: Ga0207942_1001606
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 12OCT2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4220
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (69.23%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000671	Metagenome / Metatranscriptome	945	Y
F011394	Metagenome / Metatranscriptome	291	Y
F014140	Metagenome / Metatranscriptome	265	Y
F066776	Metagenome / Metatranscriptome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207942_100160610	F014140	N/A	MHKYIVKLLVEVEVEAFNLDDATDYIGDIFNIDDEIKKVSISSIKEKK
Ga0207942_10016063	F000671	GAGG	MEKVLCYSCNKTKNQLNLRKSTLLPINLLMCETCITSKFEPRWVIILSGRQYGSESVRDFVIKKRYCGNDITASELLV
Ga0207942_10016066	F011394	AGG	MFIDKNNGKDHFKYGINQWTGEPNKPVFYTKEMAKKLRELKKPTSNLNMDIVKYPEFLAIRLYEDNFKQFDGSMRLRVIEYVEMVKNIIETYGVRCELEGAPGEGKR
Ga0207942_10016068	F066776	AGGA	VGQRNKSGGLTDRNEVLHLTMQGVEIFINRSQTKVQKSFWDNYDLVIWKKDYNGYSDTSGMFHDNQWGKAEKISVNGKGIWKLPKKYVKYFK