Scaffold Ga0208856_1003091

Overview

Basic Information

• Taxon OID: 3300020548
• Scaffold ID: Ga0208856_1003091
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 13JUL2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3994
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000141	Metagenome / Metatranscriptome	1941	Y
F002135	Metagenome / Metatranscriptome	590	Y
F024063	Metagenome	207	N
F083918	Metagenome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208856_10030913	F002135	N/A	MATTRKRRKINRRKVRKSPDPLSKLEVFYIAKHEMYKAARKAGFSESVALYLMDSPESMPDWVVGDKGIIPMIPTPDEDDD
Ga0208856_10030915	F024063	N/A	MTLELAVYLFIGLSLAYWLVLMRVDDMKQTHYWRGRKDGWDMHRRMIQNKAKSDEVFDYDKN
Ga0208856_10030918	F083918	GGGGG	MGYLEIVDGSGYQARFEDDKITIEPTTDKCMSCNDDRLLHDGKYLVCTQCHCRQ
Ga0208856_10030919	F000141	N/A	MMVSIWYVLSAIAGNKDITIMHPRFKCNGCKRDTEFLWLNKIHTPEGFSVYQCMDCGCVGVKNVVEALHIPDSDICRCDKCGGWKFEAVVCHTCQLIGAK