Scaffold Ga0208359

Basic Information
Taxon OID	3300020541 Open in IMG/M
Scaffold ID	Ga0208359_1000136 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - 26AUG2009 deep hole epilimnion (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020541 Open in IMG/M

Scaffold ID

Ga0208359_1000136 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, WI - 26AUG2009 deep hole epilimnion (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	14971
Total Scaffold Genes	43 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	28 (65.12%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

14971

Total Scaffold Genes

43 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

28 (65.12%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.098333	Long. (^o)	-89.405278	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Mendota, Madison, Wisconsin, USA

Coordinates

Lat. (^o)

43.098333

Long. (^o)

-89.405278

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000441	Metagenome / Metatranscriptome	1136	Y
F001043	Metagenome / Metatranscriptome	794	Y
F001125	Metagenome / Metatranscriptome	769	Y
F009530	Metagenome / Metatranscriptome	316	Y
F043940	Metagenome / Metatranscriptome	155	Y
F050377	Metagenome / Metatranscriptome	145	Y
F087194	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208359_100013610	F009530	N/A	MGELIMTITYSIWQGSKLISIDNVAHEAKAIDHVIQSLNDSELGKVKKFTANVMDIKVTA
Ga0208359_100013626	F043940	AGG	MKNRFRVEIYDANKANDLTIYSEQGVDKEYLTELAFSNRRNFLGDVRAYVYDTLKKTKTTALYLPSEVINFNRKNQLTREELGL
Ga0208359_100013632	F001043	AGGAG	MSEYKDGWDDGYKFAREEIMEKLSEIDINDIDSWILDRLSEMIEGGAL
Ga0208359_100013634	F001125	GGCGG	MGDRANFGFRDSKENVVFLYGHWAGYDMLAKLANAVQAAESRWQDESYATRIAISHLIGEDWNQTLSWGIYVNQLGDNEHKVPVIDWTNQTFTLYEEDLKTVVFSSSLAAFVDKYSRLVM
Ga0208359_100013641	F000441	AGGAGG	MSDEYLNDQLSKAQKLLWGGSETENIEAHNIIAKLIKDKIEQVGL
Ga0208359_100013643	F050377	AGGA	MSTPTTTREYLKTQGIAVGKRGRFSAAALGVISKAAQEGVVFTDKKNVK
Ga0208359_10001368	F087194	AGG	MTLDEYKQMVEAQRLASLSIALEALTKSKAIAEEMNK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208359_1000136

Overview

Ecosystem & Geography

Associated Families

Sequences