NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208364_1000044

Scaffold Ga0208364_1000044


Overview

Basic Information
Taxon OID3300020533 Open in IMG/M
Scaffold IDGa0208364_1000044 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 08JUN2012 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)33490
Total Scaffold Genes49 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)38 (77.55%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Associated Families7

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011647Metagenome / Metatranscriptome288Y
F025215Metagenome202Y
F030660Metagenome184Y
F043220Metagenome156Y
F046858Metagenome / Metatranscriptome150Y
F073073Metagenome / Metatranscriptome120Y
F103146Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0208364_100004412F043220GAGVSKSNVDYANEIILTLTRDELETVRESLRQFSIHNTRHGFEGRAKYADDLRDKIVNIILDSVQRRIDKEAELV
Ga0208364_100004413F046858AGGMYIEITDTIAIIIALTTSTTLVITTAIRNAKLTRALRELSVQK
Ga0208364_100004414F030660N/AMSPDDIALDFMTEQEVAEIMATEDIFQVDMTNLDDLLEDVATDSDYE
Ga0208364_100004431F011647AGGMSSGQRKRHDGWNKSIMRDGLIVILRKDGSEKVRLDPKTKEVTKGGK
Ga0208364_10000445F103146N/AMKGKRMSEPMYLQGDDYALNGTEDDVDENDTGLPDRMWEDEDA
Ga0208364_10000448F073073GGAMISSDEKMSTGFTKSIIMNDGTNQYSGRLHWDSNDGYSMAWDTSAPPEADRPEFEYVLDCITDLER
Ga0208364_10000449F025215N/AVSENQTQKRINMKLKVHHPSGDVIAEVYDFAAGALLMSLYGDGSHISYRGKALWREGIDGEGAESYDTTSMVIDSRLIEMGVQVDG
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