Scaffold Ga0208487_1015282

Overview

Basic Information

• Taxon OID: 3300020531
• Scaffold ID: Ga0208487_1015282
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 21SEP2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 965
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017133	Metagenome / Metatranscriptome	242	Y
F019325	Metagenome / Metatranscriptome	230	Y
F045756	Metagenome	152	Y
F087194	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208487_10152821	F019325	AGGTGG	MTTLNETLFSTIVHEYHNGGVKSSYGLDAYTRKELLKFLFSSKACYCINCIDKENTK
Ga0208487_10152822	F017133	AGGAG	MSIWTKFATVSDYPRGMMNLCPCGQVVLAPAMYHEGFPWWENPNKCKELFEGVNK
Ga0208487_10152823	F087194	AGGAG	MKLDEYKQMVEAQRLASLGLALEALMKSKAIQEQMKEGNK
Ga0208487_10152825	F045756	AGGAG	MTKYNVLISYVCESDSEMEAVFALNKSLYPLSENELEKFNAFHVEVVPQ