Scaffold Ga0208487_1004384

Overview

Basic Information

• Taxon OID: 3300020531
• Scaffold ID: Ga0208487_1004384
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 21SEP2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2100
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006260	Metagenome / Metatranscriptome	377	Y
F024782	Metagenome / Metatranscriptome	204	Y
F036669	Metagenome / Metatranscriptome	169	N
F102699	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208487_10043841	F036669	N/A	MPDEPKGYTGSHGFQTKDFDCALDIYIIDENGQLFIERRETEWIEGDPNAKGFLDKVGHIKTKKTWLESVNKTCTVQFYDFFSSNNTDYDYWIVYDAVFIDGKIKDIKLTTFEATANGERKKKDIEFHNKLREWDEFRKTRRYKYLLNPYNKCLKFVCNKVYKALCFLSGRVWRVH
Ga0208487_10043842	F006260	AGGAG	MQKDLYMKSHNEKILVQSDDLKYDGKNIIIPSYYVNTILDYVKDYKLDGVPQVDIEDYQLFRNFLYDVQEYKNKGN
Ga0208487_10043846	F024782	N/A	MIEKAIERLRAYNDWRTGKDQRSMNEAGITPAQVTVDIKTVCDELEKLISMYASRN
Ga0208487_10043847	F102699	N/A	MYQPNYYLTLNLPKGFSREDAEKIQKDVLDFLESKRHYGAKYDGKAGITVNVITVSTNHD