Scaffold Ga0208232_1003073

Overview

Basic Information

• Taxon OID: 3300020527
• Scaffold ID: Ga0208232_1003073
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 24AUG2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2892
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002268	Metagenome / Metatranscriptome	576	Y
F064393	Metagenome / Metatranscriptome	128	Y
F085113	Metagenome / Metatranscriptome	111	Y
F088339	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208232_100307310	F002268	AGGA	MSGTPADKSPGITGFIEIFEGRLQKMKLHLKEELGKAKHDRDRKSIRRIIADSRKLNKTLKEMRNATTKLCPHCGEKL
Ga0208232_10030732	F088339	AGGAG	MLFEAFLVFWMLEVLVLASVAVWYYYEPAEKEKKIWDPWGIWKEVK
Ga0208232_10030733	F064393	AGGA	MDKWTNWYDSLPEHTREYLKNQPLWHDIDLVKAGLVGFVIGLIFGLTV
Ga0208232_10030738	F085113	GGA	MYAYSEEWKKFKPPDDVLEQCHQVLITDVDCEQAGEPFWKIKKWCLAHCKSYVWFDVTDVSDVGYQWDEIAAYWFHDEKDAVMFTLKYKSGK