Scaffold Ga0208232_1000810

Overview

Basic Information

• Taxon OID: 3300020527
• Scaffold ID: Ga0208232_1000810
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 24AUG2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5989
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (16.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034147	Metagenome / Metatranscriptome	175	Y
F059884	Metagenome / Metatranscriptome	133	Y
F088879	Metagenome / Metatranscriptome	109	Y
F099147	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208232_10008102	F059884	N/A	MLLVGRTKLPYEQLFCLSRKELKALIKGHEIDQKDMVEAMRTHAIIGLQPHLKKGANLDPLKLWPLPWDNFGKPLETTPQDFAKAKKLLEIASKLERNGKSKNRR
Ga0208232_10008103	F034147	N/A	MAKYHSAPFKEGEIFFYPNLGSLANFEDSTGLGIGEAFTGSSIPKLDYIYALLHECHKVACLRKSTNSVSLDELKVWIEGKDVMKLFNNVLSDLLLELGVGESQEKKT
Ga0208232_10008105	F088879	AGGA	MREIATDIRIAVINAITPLTLSGVTIPIYDTELPPTINPANYVNSAAFVLITDQNEAETTNNDCSIRQNATIQINIVTKFPQGSGGKKLSENISNAIQQKMTLDYLTLPDDLQVINIRKNFSRTQIEQGSSQIAYQKILSYTLDIFFVS
Ga0208232_10008109	F099147	N/A	MIKLLVDLAPFHKDEVISVGKTYDTYLVNKGLAIWVKMDKQEIKTK