NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0208232_1000772

Scaffold Ga0208232_1000772


Overview

Basic Information
Taxon OID3300020527 Open in IMG/M
Scaffold IDGa0208232_1000772 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 24AUG2012 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6149
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004430Metagenome / Metatranscriptome438Y
F013618Metagenome269N
F032636Metagenome179Y

Sequences

Protein IDFamilyRBSSequence
Ga0208232_100077210F013618AGGMTVFTPDWKLTINAVEYTNVAISDIAHQAGREDIYSQPNPSYMQIELVALNNENYNLQVNDGLTLQVKDSTNTYRTLFGGNITDITTEVATASSIAETFTYTILALGSLAKLPKVIYNGTLAQDDDGDQIYELLSELFLNNWNEVPAAETWSGYDPTITWANAENIGLGEIDRPGVYELENRTADPDTTYNIASLIANSALGVLYEDNEGRISYADTTHRQNYLANNGYTEISANTAIGAGLKVLTRGADVRNEIILNYGNNYGSQKIAIDLTSIATFGYRGETLNTVLHDATDAQAVADRFIALRSYPRALFDSITFPLTNSAIDDADRDALLQIFVGQPMRITDLPVQIAPTQQFEGYVEGWRWSTRFNELFLTINLSPIEFSQVALQWEQVSASEAWNTLSGTLTWENAIGAVA
Ga0208232_10007722F032636N/AMAVLQLLESLMGRETDYIDRTIDDHIDDIEDIGVI
Ga0208232_10007728F004430AGGMAKAHEVLSMLIPTGGWAITGNEYEGIEFIEAEPITKAEFEAGFAKYDAWKAEQDAIQASTKKALLEKLGITEDEAKLLLA

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.