Scaffold Ga0208232_1000369

Overview

Basic Information

• Taxon OID: 3300020527
• Scaffold ID: Ga0208232_1000369
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 24AUG2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9359
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (77.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037225	Metagenome	168	Y
F092068	Metagenome	107	N
F099305	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208232_100036918	F092068	AGG	MTEKKNPNPFINLANEAKKKNTPMINGKKTEQKAPKPSKGFGGSSVVRRTGRGG
Ga0208232_100036921	F099305	N/A	MIHIKRFVDKITLIEGKQGRDVVIPIGEARGLRDELTKLLADNYELLQNTTKVEPVFQVEMNGGRF
Ga0208232_10003695	F037225	AGGAG	MNKDMQIMFKQAGGYIEIDEDGNIFTYAHDFDPDKFARLVIESCTQTLVNHGYTDAATVLETEYAENWQKYEFPEI