Scaffold Ga0208232_1000265

Overview

Basic Information

• Taxon OID: 3300020527
• Scaffold ID: Ga0208232_1000265
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 24AUG2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11600
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (11.54%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004839	Metagenome / Metatranscriptome	421	N
F010541	Metagenome / Metatranscriptome	302	Y
F014956	Metagenome / Metatranscriptome	258	Y
F021732	Metagenome / Metatranscriptome	217	Y
F031483	Metagenome	182	N
F033801	Metagenome	176	Y
F041648	Metagenome / Metatranscriptome	159	Y
F052398	Metagenome	142	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208232_100026512	F021732	N/A	MSITKYTVKCCLDKKLGHFVHVIFSSGFGLYGGNKPHHEDDNIEIHGYTFEPHDIDLSLYPVINDRNLMPLVDENEMDWVIIKN
Ga0208232_100026513	F041648	N/A	MEALANTLTDNALIRYYELRVKYLEGEQERLRNEARADYLITLDFWIYAQRIIEVYVMFHKDANHEHYLDMIKTILKNLEAHDEKALDTAINRLRLEVITRCNEAIIKCDTIRESK
Ga0208232_100026514	F014956	GAG	MNIQEFVINVTTTVCPSHIVEPLHLKKWWRQRGVGELEKYFVSGNAIHYNEEIDWNAISDHKKSLWYDSQNFQIQMGNEYSKRQG
Ga0208232_100026515	F031483	N/A	MNILKGRVKYTAGKVFEGQYGPSINAAITLENGTDIRVYGKPDDEKLKALQKDDAVTIIHDGKSYKVAFDMVTANELPEKVQTPTEQTNVQQAANVAPKTNGKLTAEEISEKATFMTGIYADIFHQLQASGLEPAQAQPAAATIFIQIGKLF
Ga0208232_100026519	F033801	N/A	MKYEIKWKSGRIITDAETVEDAIKKFKELGIEVEDKEISIALFG
Ga0208232_100026521	F010541	N/A	MEKQIYSVMYFGNAKRYQDLCEEVAAYSKRNAVEKVYEKMLNENYFPEDEFSWGGLVRDCDGNVIADANDETIEYDGGHFYAEPVMQ
Ga0208232_100026524	F004839	N/A	MEKNFTNTQFKWTFESISDNIPTIMLLTIVLTYGINAYLTAIFLPINFWVAITASTILQLGRFAVVFMDFLNPTKGRSPFPPKIALGATVIALIEVFFGLMEKYSGAEFITMFFFVGTIVCFGYLLEINFVNKGVEAYGLVEPKVIKRRKRRVVVKKVTEDAPKESKGYVTSFQTITL
Ga0208232_10002658	F052398	N/A	MNLPAIAMNIEEKIQDIQLVIDNREKRLFKTGIVESLPKINEVVKNILPLYGIDASPEHLVEVTQFITTYKLIAVDEIKLAFEKFARQELNIDDHKLYGKVDLAAIGRILTAYINWRQKVYFTVDMEDEKKRAKMEEEQRQVEAKRKFYAEFPEMLSGFKGESYEDVPVYWYDAAMEAGLIGYAEGEKRAIWEEAQDIASKQKIQADSYIDFKTQLHRVEEEGKKKAIIIAQKLAVWRIVLNKK