Scaffold Ga0208232_1000001

Overview

Basic Information

• Taxon OID: 3300020527
• Scaffold ID: Ga0208232_1000001
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 24AUG2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 112505
• Total Scaffold Genes: 178
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 127 (71.35%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000684	Metagenome / Metatranscriptome	938	Y
F009882	Metagenome / Metatranscriptome	311	Y
F029439	Metagenome / Metatranscriptome	188	Y
F035304	Metagenome / Metatranscriptome	172	Y
F070095	Metagenome / Metatranscriptome	123	Y
F100416	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208232_1000001106	F009882	AGAAG	MSTNINDAVTIDKLEVPYNPNLLVTYKAIAGTYAAPEEPTYLTSKVTDLEWELHSARAREEALRSLQGTVRQLEDNIVEWYDPNYSKEEVLVALCELFGINPVKEIEVQGTVSFSGTISVPMSEIADFDLSNVTIDVDLSSYEYDADLNVDEVSLEDHY
Ga0208232_1000001107	F000684	AGG	MTLGGYTYQIGDLFTTSKTGITGRIVKFSPINSKTTRVSLQLANGARRLAMVSTTK
Ga0208232_1000001114	F100416	AGAAGG	MGKVKSTIMDILECDSCYGYGWQFAGNDVDYDVWACECNPYNISADELIDWKLN
Ga0208232_1000001125	F029439	AGG	MTTLNTITLEPNHVMASSNTGSPMVFRNTVGNYISRKAYLEMLATKQGVVSHRYLSPNESRWVMNNTKVGN
Ga0208232_1000001126	F070095	AGGA	MEFYADLDYISFYINNLYPNGVAIEIPTWLIVGTISFIYSIKLIRKDR
Ga0208232_100000199	F035304	N/A	MDLNTLREYIRIHTISLEQDLQNEDGADSIVPYLEGAIHVSKHYLEMIDE