Scaffold Ga0208858_1011414

Overview

Basic Information

• Taxon OID: 3300020524
• Scaffold ID: Ga0208858_1011414
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 16NOV2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1475
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003714	Metagenome / Metatranscriptome	472	Y
F042864	Metagenome	157	Y
F101023	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208858_10114141	F101023	N/A	MSSFRHLDGMVALLSEIYEINERILTGDICSNKTAIASGRMKKLLHHYHEA
Ga0208858_10114144	F003714	N/A	MPNANHPYTETLTFAGRVIPLKRPMAEYAARRLQAILPQIAALNAAGKSQADAAAALDTTVCTLRQWLDITGTQWVNLNRRGPYRRQK
Ga0208858_10114145	F042864	N/A	TKPKAELVSDKAMTELLKRKAIDFRKAASLKDRDGCVKGLGSYALYGIDHARGQLVVLASEPTAGDFNKYVTAKAKADVCSRYDQVVEYRDAGSHSNPKVTILCWHLA