Scaffold Ga0208223_1008137

Overview

Basic Information

• Taxon OID: 3300020519
• Scaffold ID: Ga0208223_1008137
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 07OCT2009 deep hole epilimnion ns (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1754
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001280	Metagenome / Metatranscriptome	732	Y
F014017	Metagenome / Metatranscriptome	266	Y
F028166	Metagenome / Metatranscriptome	192	Y
F088905	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208223_10081371	F001280	GAGG	MCIECGCEAFGSETGIVPVTITDVSTDGEAGLTLSMTSTPEQTRQFI
Ga0208223_10081372	F088905	GGAGG	MSDNTKDIDTTPVVEVKEEVKPKAEAKAAPADADATVDYWANAWANRGV
Ga0208223_10081373	F028166	AGGAG	MTNGNDLTGFNELQGGDSNNLDLNPTGQAPAAAFPATDKSTQDGAGLGNGGK
Ga0208223_10081375	F014017	AGG	MDKIEDYLDERHRKQIADEIRYLELPPEWRPHEVIRYIVRIIEKSNG