Scaffold Ga0208091_1001188

Overview

Basic Information

• Taxon OID: 3300020506
• Scaffold ID: Ga0208091_1001188
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 26OCT2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4213
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (95.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002598	Metagenome / Metatranscriptome	544	Y
F004840	Metagenome / Metatranscriptome	421	Y
F017133	Metagenome / Metatranscriptome	242	Y
F019325	Metagenome / Metatranscriptome	230	Y
F026557	Metagenome / Metatranscriptome	197	Y
F045756	Metagenome	152	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208091_10011881	F019325	AGGTGG	MTTLNETLFSTIVHEYHNGGVKSSYGLDAYTRKELLRFLISSKACYCINCIDKENTK
Ga0208091_100118813	F002598	GAGG	MATKLYTIESLLVGKNYRSRSRHFEGEIVSAQKREGIWYGENTEAYLIEVNAKGLRNKFATIAVKVGE
Ga0208091_100118816	F004840	GAGG	MEYEYLVTCQYDSEAKPHWEQRYENEFGAWESFFRFTDWGMANEYSTVNIYTPTGKCYTKVFYRDGRVQVRA
Ga0208091_10011882	F017133	AGGAG	MSIWTKFATVSDYPKGLMNLCPCGQVVLAPALYHEGQPYWENPNKCKELFEGENK
Ga0208091_10011885	F045756	AGGAG	MTKYNVLISYVVEAEDEMRAVFALNKTLYPLSENEIAKFDPFMVEEVTQ
Ga0208091_10011889	F026557	AGGCGG	MINSVLTIPCEECNSTGLIFFGNDFDYDVETCECDFGIEQDLNQFNN