Scaffold Ga0208091_1000284

Overview

Basic Information

• Taxon OID: 3300020506
• Scaffold ID: Ga0208091_1000284
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 26OCT2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10367
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (72.73%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000468	Metagenome	1102	Y
F002162	Metagenome / Metatranscriptome	588	Y
F002357	Metagenome / Metatranscriptome	567	Y
F007469	Metagenome / Metatranscriptome	350	Y
F013887	Metagenome / Metatranscriptome	267	Y
F037698	Metagenome / Metatranscriptome	167	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208091_100028414	F013887	N/A	MYLSKAIRLLKPTAEFSINNDDYNTVKWDSLEGDAPTKKEIDDAIKQIKADEIAAAEAKATAKATAQAKLAALGLTVEDLQALGL
Ga0208091_100028416	F000468	AGG	MTVWTPDWKLSVAGVDYENITIADIAHQAGRDDIYTQPNPSYLQVEVVALSGQTLPFEINDGLTLQVKNSAGTFVSLFGGNITDVTVEVRNTGSVSNVISYTLLAMGSLVKLAKEIYTDNLSQDIDGDQIYTLLSSSLLNTWNEVPAAETWSGYSPTETWANAQNIGLGEIDAGLYTMSSRSANPDTIYNIASQIADSALGYMYEDNQGNIGYADADHRQTYLLANGYTELSANTALGSGLRTLTKSADIRNDIYINYGNNFNNEATATDTASIALYGYKGETINSAIHDGTDAQEIADRYISLRAYPYATFDSITFPITNSEIDNADRDALLGVFMGQPIHVTDLPFQINNGAFEGYVEGWRWSTRFNELFLTINLSPINFSQVAMRWNTVPVTEAWNTIGNTLTWEYATIVA
Ga0208091_10002842	F037698	AGGAG	MCANHDEMTHQINWAYQNKLRKQWLLDNPDAQYIGWMSI
Ga0208091_10002843	F002162	N/A	MPNYDYMCDGEGSLIVLDLPMDHKIPHCQVCNKPLRRVFTAVPTIFKGTGWAGKDG
Ga0208091_10002844	F007469	AGGAGG	MGELQIIDGSGLTATFTDDGVVVEPSVVTCDLCNDDRLLHEGDLLRCYSCHAINRIPYHA
Ga0208091_10002845	F002357	AGGAG	MAFNLEDYEDVATLNKWLISNYPMFRSDLSVISHDPEKGYILIQATLWRDSKDAAPAVSNVAFGSRETYIQNMKKFYVEDTATSALGRAIILLKGSDKTATKDDMRKVESNPSFKEKLESRQNMYGKPGSKSAQIETILRDSFAADKKEPEPVAWSVGDVVDQIGSSIPNEPPACQHGHILKEGISKGGKPYYGYVCKAKECPPNWATLTANGKWYFKGGE