Scaffold Ga0208091_1000187

Overview

Basic Information

• Taxon OID: 3300020506
• Scaffold ID: Ga0208091_1000187
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 26OCT2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13860
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (86.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006110	Metagenome	381	Y
F050379	Metagenome	145	Y
F069702	Metagenome	123	Y
F073074	Metagenome	120	N
F096875	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208091_100018713	F050379	AGGA	MTSNELTDAQLQMEADDLIAKYKDEIIDQGDWWYGTDDYSFNIHCLDDECDGWYNVNVYKVDPVTGMDNYEWMIDLPRVFLGVPT
Ga0208091_100018716	F073074	GGA	MDIITKTAKDAARLLNAIRAQYIIVLPTGEQIIEGDLKLHVPDATPSKKKRAPSRNPLGYLRGHIMPYLKPMKVGDVAVIPVPNNSDVKEIQGSCASMSNVLWGKGNYKTMRNMNTGNVEVLRMG
Ga0208091_100018721	F096875	GGA	MPTTGRWKITVFQGAVAKMNASYTHEALPEWIRKDIALLSMMDNMGEIPSIGHRVGDAYWLTPKDKDESCTGI
Ga0208091_100018726	F006110	AGGGGG	MPRPKPPEPITFRNIRMSDRQWIIFNELGGAEWLRGFLEKKAPMPKQYYDKLLQEEQNDRTRKTNGTIPHC
Ga0208091_10001873	F069702	GAGG	MKLSLKQKRAGAVNVYEVKLTLYVHHQSEKEVQSYLFTALENWAKDGEVITGVQFDSIEESDKRFFVNVSYPECFAEEA