Scaffold Ga0208091_1000111

Overview

Basic Information

• Taxon OID: 3300020506
• Scaffold ID: Ga0208091_1000111
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 26OCT2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18903
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (70.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000369	Metagenome / Metatranscriptome	1222	Y
F000376	Metagenome / Metatranscriptome	1216	Y
F003379	Metagenome / Metatranscriptome	490	Y
F071247	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208091_100011117	F003379	GGAG	VKKVWALITISATAILSGLALSKFLKWVGQQEVFDFDLNEDIDNDEWNKD
Ga0208091_100011122	F071247	GGAG	MGSNNKIPFNPTVIKNGRIIRIRKDGTIKADLGPVKSNKKRIKNV
Ga0208091_10001117	F000376	AGGA	MSMYQEKAKECICCGKHVPLPIVLKDYNGVKVCPTTYYNIKEYSRIWTSIGSRPTGGIRKHFSEYVQSLVEIEKSNESV
Ga0208091_10001119	F000369	N/A	MEIELSDHFDRMNKVVEELLKGSNPAQISSLTGFKRAEVVEYIDEWKSIVKNDSTSRDRAKEAVSGADQHYAMLIKEAWKTVDDADQQGQLNVKATALKLIADIETKRIAMLQQIGLLDNQEIADQIAETERKQDVLVSILRDVAKDYPDIRREIMKRLSQITGVVEPIEIIESKNVI