Scaffold Ga0208084_1000413

Overview

Basic Information

• Taxon OID: 3300020499
• Scaffold ID: Ga0208084_1000413
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 14SEP2009 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10238
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (89.66%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000450	Metagenome / Metatranscriptome	1126	Y
F002071	Metagenome / Metatranscriptome	596	Y
F006984	Metagenome / Metatranscriptome	360	Y
F018349	Metagenome / Metatranscriptome	235	Y
F024549	Metagenome / Metatranscriptome	205	Y
F037190	Metagenome / Metatranscriptome	168	Y
F047643	Metagenome / Metatranscriptome	149	Y
F091432	Metagenome / Metatranscriptome	107	Y
F091920	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208084_10004131	F006984	AGGA	MPNWVYNTLTIQGPKEEIDYIKDRLNRPFTLAQETYGMGDISLSGFPTKIEQVTYSNPVFAFFNIHSYKDEGITDEEYAC
Ga0208084_100041312	F091920	N/A	MKNRFRVEIYDANKLNDLTIYSEQGIDKEYLTEIVFSNLSRFSGNVKAYVYDELKKSKTVALFLPEQTVNKYKPKQLTRIELGLI
Ga0208084_100041314	F002071	AGGA	MATLTIGQTFTTTNSGVTGVIKAVDNHPSGVARILLDVNGTERWTSVSAK
Ga0208084_100041319	F024549	AGGA	MYKLTTIYDGGISKETYGFSDALEAFEAFARCKDVGFAMENATYNLTLPNGKMYTKNFDRTGLVSQK
Ga0208084_10004132	F000450	AGGA	MGDRANFVFVQPSGETIVLYGHWAGYNMLENLAEAVAKAQPRWSDPSYATRIAISNMIGDAWASETGWGLQVNEISDNEHKIPVVNWLECTFSLHEEDSFHNESNKVRGMKNEAMFTMDLRAFVEKYTDAKILV
Ga0208084_100041321	F091432	AGGA	MDLKDFRDFITAQRLAEIKEKRNSNLTAILSVANATITETTRKEN
Ga0208084_100041326	F037190	AGGA	MDRYLVIDITSDGLAFETAQLDFYLSPLGMLLVALSVVAYRIYKVKQTKKARY
Ga0208084_10004134	F018349	AGGAGG	MDYREGFEDGVKFTREVIINNIRRWAEAHDDGAVLDWVADKIEFGTLDHDL
Ga0208084_10004135	F047643	AGGA	MYYQLQAPSGAVCKAAYWEAEFSGLDPYYLEDNAFELGTGSIEKVSALISKYKLDILVESDYQPTGYTRR