Scaffold Ga0208050_1001788

Overview

Basic Information

• Taxon OID: 3300020498
• Scaffold ID: Ga0208050_1001788
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 13JUN2010 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2963
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (91.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007519	Metagenome / Metatranscriptome	349	Y
F019438	Metagenome	229	Y
F093280	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208050_100178810	F007519	AGGAGG	MTTGIEELKLIKPKKGRGLGKKPPLFCTSLRLPKEVMDYFNTKYPYTKQAKMREILTEYINSQQGANNGNN
Ga0208050_10017882	F019438	GGAGG	METIVTTILLGGLGFIVCGLVLVGLMHLWFWMDENERGDR
Ga0208050_10017884	F093280	GAGG	MSPKIEALIKATGCADVGELFDRSIRLGSYLHQFKQEHGRPMTATEMKYLEAVLHATPPERA