Scaffold Ga0208050_1001191

Overview

Basic Information

• Taxon OID: 3300020498
• Scaffold ID: Ga0208050_1001191
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 13JUN2010 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3721
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (92.31%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F000441	Metagenome / Metatranscriptome	1136	Y
F001460	Metagenome / Metatranscriptome	690	Y
F002387	Metagenome / Metatranscriptome	565	Y
F003603	Metagenome / Metatranscriptome	477	Y
F013184	Metagenome / Metatranscriptome	273	Y
F024786	Metagenome / Metatranscriptome	204	Y
F050154	Metagenome / Metatranscriptome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208050_100119110	F024786	GGAG	LPVYRVFGTKYQNYYTIIEAADQFEAVDLANALPETEWNSILTDDVIEATDVYLNEDTSNELQLNI
Ga0208050_100119112	F003603	AGGCGG	MKTKEQQVAELLCNYSEDHFFNPASLGGFLADQPTYTLDRIMEVVTWVIEKQARRYEREVENGGLVSEGLALAYKLDQVVDKIKEKNTFNNLKLPITNQERKAIIDRMPKEKTGDYKYSWLHETNNTNKQYIDQSYM
Ga0208050_10011912	F002387	AGGAGG	MASFLEDVNQMVIDAVYQDIAEQLLEDWINNNLDEGQYYADKQFAEMSGDRFIQDEFNKFYNLKEGDEDYL
Ga0208050_10011913	F013184	GAGG	MRSYDFVIKLAGSVMANNEKEAHNKINAHLDDLGEVDSTRYDLGWPDVSWDMEYDLC
Ga0208050_10011914	F001460	GGAG	MLGYTESDLNRMINAIHDSKLFYLRTPSDLMDKEPLRKDLEDAVSFLQGLWAEGYFDHTN
Ga0208050_10011915	F050154	AGTAGG	MKIHLISLNQDLEGDYNVQSKINIQGQIMATEHLLSVATDIMNETREN
Ga0208050_10011916	F000263	GGAG	METTTLPPHLQRMVDAGVTGLDIMHGELKNLMLIAEQDLADALEQEERSEEAMDSMVRTECEGRLDMLVELYQLTYDLSFAIGARNEA
Ga0208050_10011918	F000441	AGGAGG	MKMSDEYINDQLNKAQKLLWGGSETENIEAHNIISKLIRDRMSEKEGTND