Scaffold Ga0208050_1000418

Overview

Basic Information

• Taxon OID: 3300020498
• Scaffold ID: Ga0208050_1000418
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 13JUN2010 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6970
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000369	Metagenome / Metatranscriptome	1222	Y
F000376	Metagenome / Metatranscriptome	1216	Y
F024039	Metagenome / Metatranscriptome	207	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208050_10004181	F024039	N/A	RKQRTADYFNKKHGLAIEDFDVADAFGIAYYAREVLTNK
Ga0208050_10004185	F000369	AGAAG	MEIELADHFDRMNKVVEELLRGNNPTQIATLTGLKRAEVIELIDEWKNVVHNDTSARERAKEAISGADQHYAMLIKEAWKTVEDADQAGQLSVKSGALKLIADIEGKRIGMLQEVGLLDNAEMAGQIAEAERKQEVLVKILKEVTATCPKCKMEVAKRLSQITGIVEPIEIIEEVSGI
Ga0208050_10004187	F000376	GGA	MSIYQEKAKECKCCSKHVPLPTRLKEYEGVMVCPTTFDNIHEYKRVWSDIGMRPPGSIRKHFSEYVQQIVEQSIDKNNNKIL