Scaffold Ga0208050_1000282

Overview

Basic Information

• Taxon OID: 3300020498
• Scaffold ID: Ga0208050_1000282
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 13JUN2010 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8991
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (60.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028146	Metagenome	192	N
F051072	Metagenome	144	Y
F081254	Metagenome	114	N
F085379	Metagenome	111	N
F104765	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208050_100028210	F104765	AGGAGG	MKAAEIIAICSIMLSAGIGAGFFWGLRQGERIGRDREWMDSFFRSIKRDAERRDKAGRFKKR
Ga0208050_100028213	F028146	N/A	METTHEIKKAAVIAAASEQVRALLETHYDAMRKAAEESFVDDESQAEPKAKASFTIEWDALAMAPTVTVKVGWSVRFKDESESVVDPLQAKLEIGGAE
Ga0208050_100028215	F081254	N/A	MTDQHAEQIIAELRAIRALLANKPAAPAAASAPAPAGAPKEIPQPTEIVADPGSVEVHFGKNKGTPLRSLGAKSVEWYAQEPEPRIGNNGKPFPPRPEDVRLRNAARQLVHGNRGTLAAGTRVTLVSETLTEEVPF
Ga0208050_100028216	F051072	N/A	MNNNFNRSNPIKNLTGGGHSAARYTGTHGHVERSHYWVFIPGEGWVTWREIHRQVTASFRDWEMRHILGLRKPKAKTQ
Ga0208050_10002829	F085379	GGAGG	MSARPNPKSEVIDEMVARFAPFKEILAEVRMQQAAVRQRIYNRGYRREYITHEERAHLLRRRGVKL