Scaffold Ga0208050_1000202

Overview

Basic Information

• Taxon OID: 3300020498
• Scaffold ID: Ga0208050_1000202
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 13JUN2010 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11117
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (73.68%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Pirellulaceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015072	Metagenome	257	Y
F022866	Metagenome	212	Y
F033002	Metagenome	178	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208050_100020212	F033002	AGGAG	VPDALPDAYLEQCEQDARRFSGAYTGTSGTLAAHVMRLLADRERLAEELAVERARRQDA
Ga0208050_100020218	F022866	GGAGG	MHRISNLMPALVLVRIGQELGTNSPAARAVHDLLELLSAVPWKILGSP
Ga0208050_100020219	F015072	AGGAG	MNDPHHNEYLAAVAAMPEHTVSGGTTRLIDGQLVTTYAVGDRIRWTDKGRTLAGVVVEVLTHDTYHVRRHVPDRGNLHYAVTADQIVPF