Scaffold Ga0208050_1000109

Overview

Basic Information

• Taxon OID: 3300020498
• Scaffold ID: Ga0208050_1000109
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 13JUN2010 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19457
• Total Scaffold Genes: 52
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 41 (78.85%)
• Novel Protein Genes: 12
• Novel Protein Genes with Ribosome Binding Sites (RBS): 11 (91.67%)
• Associated Families: 12

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F000441	Metagenome / Metatranscriptome	1136	Y
F000852	Metagenome / Metatranscriptome	860	Y
F008814	Metagenome / Metatranscriptome	327	Y
F011394	Metagenome / Metatranscriptome	291	Y
F021988	Metagenome / Metatranscriptome	216	Y
F023344	Metagenome / Metatranscriptome	210	Y
F038241	Metagenome / Metatranscriptome	166	Y
F040629	Metagenome / Metatranscriptome	161	Y
F060917	Metagenome / Metatranscriptome	132	Y
F063705	Metagenome / Metatranscriptome	129	Y
F072349	Metagenome / Metatranscriptome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208050_10001091	F023344	AGGCGG	MEAFTDTVGEHILGAIQVDIEQHLFEQWNSKNLDEGSDYAEYMFMQFAPDSLKQSYNEYYGYIEGDEFLL
Ga0208050_100010910	F000852	GGA	MTTKREYLKQQGITVGVRGRFSGAAKVALAEAEAKGVKFTAEAPVKKAK
Ga0208050_100010918	F060917	GGA	MINWLVNKLFWWSPLRDAIFDEVHMYDHIDSIMNDPDSMNTGSLSWMEGDMWYGWTYNSNARRYYFDDIGNKSLIGLWEDQWLREADEGVTK
Ga0208050_10001093	F038241	GGAGG	MLGYTKTDIDEMGNAMHDAKLFYILKSDIVRVDEDPIVDGLLKAQDFLQGLWAEGYFD
Ga0208050_100010931	F021988	GGA	MSMDGTGMAPPPNGAAAGAVTSREATRKNPRQGLKIDTNKHGIRREINTAQRPPKKIGRKKI
Ga0208050_100010940	F008814	GGA	MAEITVLDGIIKDLGQELYQKWYNGLAQEDITPEASEAMAKNAGETTFWVIQNFMIRFNEAAEALKDK
Ga0208050_100010945	F072349	GGAG	MEKVLCYSCNKTKASLSLKRSTLLPINLLLCETCILNKLEPRWVVILTGRQYGHDTVKDYISKKRYHGEDIKASELLV
Ga0208050_100010947	F011394	N/A	MANFINKDKDHFKYGINEWTGEANKPVFYTKEMAQKVRELKSPAHDLQMDIIKYPEFLAIRLYENNFSQYDGSMRMRVIDYIEMVKRILESYGVRVELEGKPGGRTR
Ga0208050_10001095	F063705	AGGAG	MTKSSYFLEYMKLHLISLNQDWEDSKNSVPLNEDEYDPSDDYYVGATEAVEHLLSVATDIMNSSNERYE
Ga0208050_100010951	F040629	AGG	VNTYIVKIEVLASVDAFSEADAKDYISDIFNVDDEIKSVKIIKIAKSS
Ga0208050_10001097	F000263	GAGG	MNAEDIGLPPHLQRMVNAGVSGLDIMHGELKNLMLIAEQDLASALEQEELSEEAMDSMVRTECEGRLDMLVELYNLTYQLSFAIGARDEA
Ga0208050_10001099	F000441	AGGAGG	MKMSDDYINDQLNKAQQLLWGGSETENIEAHNIISKLIKDRIEQVS