Scaffold Ga0208050_1000020

Overview

Basic Information

• Taxon OID: 3300020498
• Scaffold ID: Ga0208050_1000020
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 13JUN2010 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 60220
• Total Scaffold Genes: 98
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 75 (76.53%)
• Novel Protein Genes: 14
• Novel Protein Genes with Ribosome Binding Sites (RBS): 10 (71.43%)
• Associated Families: 14

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F000441	Metagenome / Metatranscriptome	1136	Y
F006846	Metagenome / Metatranscriptome	363	Y
F008245	Metagenome / Metatranscriptome	336	N
F011394	Metagenome / Metatranscriptome	291	Y
F014140	Metagenome / Metatranscriptome	265	Y
F020166	Metagenome / Metatranscriptome	225	Y
F021988	Metagenome / Metatranscriptome	216	Y
F042904	Metagenome / Metatranscriptome	157	Y
F072349	Metagenome / Metatranscriptome	121	Y
F084239	Metagenome / Metatranscriptome	112	N
F090403	Metagenome / Metatranscriptome	108	N
F092053	Metagenome / Metatranscriptome	107	N
F105192	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208050_100002015	F006846	AGGA	MKMLIDLVERYLMRPKRLREAIQSVVRENDDLLRLLKEYEDNEVPTNLTWSEGDTWYGWTYSPEKKRYYFDDIGNKSLMGLWEDQWLREADDNKA
Ga0208050_100002016	F020166	N/A	MKEPKIMKMDWRPLGYWPVYKDGKLTWEKDPDENVN
Ga0208050_100002025	F021988	AGG	MSNSFKKEDGTGMVPPANAGAPAGAVTSTNTPKKHPRQGVKIDRNKHGIRRETSLIPKPPKKFGRKKV
Ga0208050_100002033	F042904	N/A	MAELTVMDEIIGEVAEDLYNKWVSAMPDEEKNQHAFSAMSKNAHETTLFVIQEFMNKFNAAAEELRDK
Ga0208050_100002038	F105192	N/A	MNISLTQILITLFAASISGLLTAQINSRRSKKERAAQAADKAHDQLLLEIKDLQIKLYKLEKDLSEWKDKYFEAIQELIKVKSELEGTMLRLTHIEMHEDGLDDL
Ga0208050_100002039	F072349	AGGGGG	MDKVLCYSCNKSKNELTAKKSTLLAINLLLCKTCTENKFEPRWIVILAGRQYGADHVKEFIAKKKYIGVDITASELLI
Ga0208050_10000204	F084239	GGAG	MNKSSRFMEYLKIHLISLEQDLEQIDYVNAHHFYRVKQAEIENTRHILSVATDIMNSTNERVYG
Ga0208050_100002040	F011394	AGGA	MFIDKNKDHFKYGVNEWTGEPNKPVFYTKEMAKKVRELKSPAPNLEMDIVKYPEFLAIRLYENNFAQYDGSMRVRVIEYIEMVKNILQSYGVRVELEGKPGGKNNG
Ga0208050_100002044	F014140	N/A	MNKYRIKLDIEVEVEAFNTEDASEYIHDIFNVDDEIKKINVVKISPINH
Ga0208050_10000205	F092053	AGG	MKLSSEVKEDLQDQADQIIYFEAAMSNEDKASKAVYDRLVEIYKVAFKEGAKK
Ga0208050_10000206	F000263	AGG	VTPEDIGLPPHLQRLVNAGVSGLDIMHGELKNLMLIAEQDLASALEQEELSEEAMDSMVRTECEGRLDMLVELYQLTYQLSFAIGARTL
Ga0208050_100002073	F008245	GAGG	MTEDKNTLQLISDITEFNDLHEYMKDEHLDKALAIVVKILMNPEVPSAKAPVLIMELQAMSTKFGVMASVYSTIAKDKAGTVNNNKKNVYYSVKESIDKLVDALKYVVRYN
Ga0208050_10000208	F000441	AGGAGG	MKMSDTYINDQLNKAQQLLWGGSETENIEAHNIIAKLIKDRIEQTDLL
Ga0208050_100002087	F090403	AGGCGG	MAEMARYTLETGAAKKRKREAEVEYWNSLNGPVVVTKVVGDKDGK