Scaffold Ga0208230_1000022

Overview

Basic Information

• Taxon OID: 3300020496
• Scaffold ID: Ga0208230_1000022
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 01NOV2011 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 27222
• Total Scaffold Genes: 46
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (19.57%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035632	Metagenome / Metatranscriptome	171	Y
F088308	Metagenome	109	N
F095001	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208230_100002235	F088308	N/A	MKALLIALLLWVCNDNVVIEKAGDVEGRKTYHVKVGDKTYEYMYAEEISHAMKTGVWVYNEDLK
Ga0208230_100002240	F095001	AGG	MKVKIDMKGKYGTYFTQVKEFKDNNHLENWLKWMYSNQDRVKVIGTTNL
Ga0208230_10000225	F035632	N/A	MEKFLSIPVTNEQNQLLSATGIVLIVQASTTTVTVHYKASTGTDVVTITHAAAASGNESMRDAIQSAVVSALGTSWTNVAFQVENLPFAVSGITIA