Scaffold Ga0208326_100033

Overview

Basic Information

• Taxon OID: 3300020494
• Scaffold ID: Ga0208326_100033
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 25SEP2008 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7293
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033002	Metagenome	178	Y
F049573	Metagenome	146	Y
F102622	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208326_1000333	F102622	AGGAGG	MKRQWNAAMKSLLLIRVGQELGTSSELAQTIAHSIDFVLGTLARFFS
Ga0208326_1000335	F049573	N/A	MVLALPEGKKLISTAEAAKILGVTMGRMRQLAIAGPKKGGLHSWLAAPTARVFDEVEVKKRAGSTQKTGRKAGGFKAN
Ga0208326_1000337	F033002	AGGAG	MEKLTDAYLQQCEFDARKFSGCWDQGTSGTLAAHVMRLLAELSRTRGDLAVERARRVDS