Scaffold Ga0208326

Basic Information
Taxon OID	3300020494 Open in IMG/M
Scaffold ID	Ga0208326_100011 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - 25SEP2008 deep hole epilimnion (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020494 Open in IMG/M

Scaffold ID

Ga0208326_100011 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, WI - 25SEP2008 deep hole epilimnion (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	9440
Total Scaffold Genes	30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	28 (93.33%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

9440

Total Scaffold Genes

30 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

28 (93.33%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.099444	Long. (^o)	-89.404444	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Mendota, Madison, Wisconsin, USA

Coordinates

Lat. (^o)

43.099444

Long. (^o)

-89.404444

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000447	Metagenome / Metatranscriptome	1128	Y
F000980	Metagenome / Metatranscriptome	814	Y
F001125	Metagenome / Metatranscriptome	769	Y
F009530	Metagenome / Metatranscriptome	316	Y
F043940	Metagenome / Metatranscriptome	155	Y
F087194	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208326_10001113	F000447	GAGG	MGYIEIFRIDQNGAGWVDLSEATPDELFNIEVGLLNEGALFTTPEAD
Ga0208326_10001122	F043940	AGG	MKNRFRVEIYDANKLNDLTIYSEQGVDKEYLTELAFSNRRNFFGDVRAYVYDTLKKTKTTALYLPSEVINYGRTNKLTRDELGL
Ga0208326_10001125	F000980	GGA	MSVAWCIILFMTNELISSKYTFACDPEHCDCLIELTSSDGFGFPSGVTELTCPCGRKTTLLSVEHATIAPTTTEEVKMETTEHLVPDTYNSNLLVTYKKINGYSNPEYITDKVTSIEWDLHNARQSQKTLNSIQSKIDAVKEIICEAYADSQDQDTLRDIAEALGIELIKEVQFTASVEVTGTYSYDVLSDYSEYDLESVITDSLYAESNDGNITIDDTEVCNVREA
Ga0208326_10001129	F001125	GGCGG	MGDRANFGFKDQKGDTIFLYGHWAGHDMLAKLANAVSAAETRWQDPSYATRIAISHLIGEDWNQTLSWGLYVNQLGDNEHKVPVINWASQTFTLYEEDMSTVVFSLSLAAFVDKYSRLVM
Ga0208326_1000113	F087194	AGAAGG	MNLDEYKQMVEAQRLASLAIALEALTKSEAIAKEMNK
Ga0208326_1000115	F009530	GGAG	MTITYSIWQGSKLISIDNVAHDVKAIDNLIKTLNDSELGKGKKFTANVQNIKVTA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208326_100011

Overview

Ecosystem & Geography

Associated Families

Sequences