Scaffold Ga0208464_101184

Overview

Basic Information

• Taxon OID: 3300020482
• Scaffold ID: Ga0208464_101184
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 13SEPL2008 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1875
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024314	Metagenome / Metatranscriptome	206	Y
F027847	Metagenome / Metatranscriptome	193	Y
F038479	Metagenome / Metatranscriptome	166	Y
F095473	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208464_1011841	F038479	AGGTGG	MTTLTNQYKGLSLDQKIAIAAQMVVDGKTVSFRGASADTYNKVMLLANRIKQELEFPLCPCEECN
Ga0208464_1011842	F027847	AGGAG	MNPFTYVQDWLDENADYAPIGAFIGLGIAIVLAFILGGN
Ga0208464_1011843	F095473	GAG	MTTCKVINCESTELVYSGTDAFMLGINTETYCYKCANAYAQIDRAMTKVREEYLASVSTLTTSD
Ga0208464_1011846	F024314	N/A	MDSDQQQLSPEQAQAILLFQIEQKLRFAIANQVEQKFHGTYHGASHDI