Scaffold Ga0211585_10001154

Overview

Basic Information

• Taxon OID: 3300020477
• Scaffold ID: Ga0211585_10001154
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001123 (ERX555935-ERR599156)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 38060
• Total Scaffold Genes: 47
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 38 (80.85%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_125
• Coordinates
  • Lat. (^o): -8.9103
  • Long. (^o): -142.5767
  • Depth (m): 140

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015150	Metagenome / Metatranscriptome	257	Y
F026850	Metagenome	196	Y
F050672	Metagenome	145	Y
F090992	Metagenome / Metatranscriptome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211585_1000115412	F026850	AGGA	MTTENNITITMQDVDIVMALNPEFKQQILIAATSRMRSEVTQNIEKEATEKAKK
Ga0211585_1000115426	F090992	GGA	MAINPTFAGFLEEEPRAAFFGTLGQKGLMDSAGRRKQAEDIYSGAMTEFYGKLGEQILGGGEPTMTFSNFLEDFPFTDRFAQLGRQYSQQSRYKPSTRFLYY
Ga0211585_100011546	F050672	GAGG	MPNDPIIIGIAVIAIAVLGYTAISGMMNSGKSGKDKTNKGA
Ga0211585_100011547	F015150	AGGA	MHPLSWMLKYFIGSIVGAATVVQAVRIAKFELGNTVEGLIFRLGVHPDKYKRDDE