Scaffold Ga0211625_10041533

Overview

Basic Information

• Taxon OID: 3300020473
• Scaffold ID: Ga0211625_10041533
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000700 (ERX555932-ERR598948)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2915
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → unclassified Methylococcaceae → Methylococcaceae bacterium TMED69 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_122
• Coordinates
  • Lat. (^o): -8.9632
  • Long. (^o): -139.2276
  • Depth (m): 115

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035332	Metagenome	172	Y
F036932	Metagenome	169	Y
F090259	Metagenome	108	Y
F092693	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211625_1004153310	F035332	N/A	DDIQGLEASHKMITTLCRQFDARVENRGMDKRFSKIAFIKALRGYMKTQMDAVESEDIRFEDMRNLKGAKQYADAIWNGWRP
Ga0211625_100415333	F090259	GGAGG	MKVGELYEVRHKWLLPRSRANFWDDCGTVLYLGEDVIERDDGTKIVNHVVFVKGQRVILDQSMLKFLELADASG
Ga0211625_100415334	F092693	AGG	MIIWILSGSYEGEQFASSHLTEKGAILAAIADVLQLLGIEDGEDAHRVCNTRTSGIEEDPGVEPPEWDLEKMREMPRDKLWGIFGEWNERTWDNQMGYSIEVIKTKLAA
Ga0211625_100415337	F036932	GAGG	VKTLKATPAFKVGDFVRIKEGTHQEDIPASRMGHIRGYANGSKLYNDKGVTVQPTDQYNVYMTNGKTLKFHEMFLELVDEEG