Scaffold Ga0211625_10036656

Overview

Basic Information

• Taxon OID: 3300020473
• Scaffold ID: Ga0211625_10036656
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000700 (ERX555932-ERR598948)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3167
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → unclassified Methylococcaceae → Methylococcaceae bacterium TMED69 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_122
• Coordinates
  • Lat. (^o): -8.9632
  • Long. (^o): -139.2276
  • Depth (m): 115

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036932	Metagenome	169	Y
F090259	Metagenome	108	Y
F092693	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211625_1003665610	F036932	N/A	MTVKTLSATPAFVIGDFVRIKEGTHQEDIPPSRMGHIQGYANGTRLYNNQGVTVSHRDQYFVYMTNGVTLKFHEMFLELVDE
Ga0211625_100366565	F090259	GGAGG	MQVGELYEVRHKWLLPRSRANFWEDCGAVLYLGEDVIERDDGTKIVNHVVFVKGQRVIIDQTMLKFLELADASVR
Ga0211625_100366567	F092693	AGG	MIIWILTGSYEGEQFASSHLTEKGAVLAAIADVLQLLGVEDKEAAQRVMSNDMSGKGLMEGDEPIEWDLEKLRNMPRNELWGIFHEWSEYTWDNQMGYGIEVIKTKLAA