Scaffold Ga0211579_10052650

Overview

Basic Information

• Taxon OID: 3300020472
• Scaffold ID: Ga0211579_10052650
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001250 (ERX556017-ERR598995)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2521
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_132
• Coordinates
  • Lat. (^o): 31.4813
  • Long. (^o): -159.088
  • Depth (m): 115

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002146	Metagenome	590	Y
F004376	Metagenome / Metatranscriptome	441	Y
F029563	Metagenome / Metatranscriptome	188	Y
F035481	Metagenome	172	Y
F099988	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211579_100526502	F029563	GAGG	MKIFNITFTEECTSQVKIKANTLEEAKKIVNSGDFMGDEIIDRDHFEIIESYQESEGE
Ga0211579_100526503	F004376	AGGGGG	MMECLDCGFNEGTLLKQFQEQPEKSYSWYELSEMTEVCASCGSENIKIESEGNNENI
Ga0211579_100526505	F002146	AGG	MIKNILNFLLWKKEEIFSFLDYVLFLVMIYICYLGLKYAPQIEQLIIELKGGAI
Ga0211579_100526506	F099988	AGGAG	MKIEYILYGLKINDPDYMEDIIYTSYNPSEISKARKLAIKKGFVKFRVATFNGETPNFNDPKLINL
Ga0211579_100526508	F035481	N/A	MENQEKYKIIKFRKSGTQKVMKKNLTLDEAKRYCSRPDTRGKNWFCGFTKQ