Scaffold Ga0211579_10019853

Overview

Basic Information

• Taxon OID: 3300020472
• Scaffold ID: Ga0211579_10019853
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001250 (ERX556017-ERR598995)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4390
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_132
• Coordinates
  • Lat. (^o): 31.4813
  • Long. (^o): -159.088
  • Depth (m): 115

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008590	Metagenome	331	Y
F026439	Metagenome	198	Y
F057769	Metagenome / Metatranscriptome	136	Y
F083258	Metagenome	113	Y
F093834	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211579_100198531	F083258	AGGA	METIHTITTPDLTAKLNKQEVDILHFIDCWLPTLTDWSVDELAHKTRATVSDAHAAVDMLILHGLLDHAPDCDVTGRRVSVPDIAARWVRENSETIYSIKLMNDTDLYDDTEIAES
Ga0211579_100198532	F093834	AGGAGG	MEFIIYMALVVLTTFVIIAINEVAKEVRGVRSVFETHYQLERVPIKSEDTYKRKGVEL
Ga0211579_100198535	F026439	AGGAG	MASQLDTVLTFDQATEQFTDCILPMIQESEQRLGHVDIPARSEAWSNFADDLHANEQISDWQVSNWEHPDCCND
Ga0211579_100198536	F057769	AGGAG	MTIEIGSIVTNVGFIQGRNNSNHGVVISLMADGKIARVFWASTQKSGFCSVSDLQAIA
Ga0211579_100198539	F008590	AGG	MQVGDLVTYHFQLPRWRAGLSVHVGLIVETGKYTGNRDVKVLWNDKKEPETEASQHLTLVDNLLTT