Scaffold Ga0211579_10001803

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211579_10001803

Scaffold Ga0211579_10001803

Overview

Basic Information
Taxon OID	3300020472 Open in IMG/M
Scaffold ID	Ga0211579_10001803 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100001250 (ERX556017-ERR598995)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	16391
Total Scaffold Genes	31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	17 (54.84%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location Name	TARA_132
Coordinates	Lat. (^o)	31.4813	Long. (^o)	-159.088	Alt. (m)		Depth (m)	115
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F085579	Metagenome / Metatranscriptome	111	N
F103872	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211579_1000180321	F103872	GGAG	MSSLRNEAILETIYEEIMEELTLTETLPMYSEKEIEALCYQKFEDMCH
Ga0211579_1000180323	F085579	AGGAG	MTTMPNHLYKDDINRTLLEDTLLTVCQKNEGILDMCINHLVSTLSDNEVERWDELVSTNFWDIYEEKCIQHSANPVAQDHNKPINIVRTK

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