Scaffold Ga0211577_10001815

Overview

Basic Information

• Taxon OID: 3300020469
• Scaffold ID: Ga0211577_10001815
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001093 (ERX555967-ERR599052)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20247
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (84.38%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_133
• Coordinates
  • Lat. (^o): 35.4068
  • Long. (^o): -127.7432
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038862	Metagenome	165	N
F059448	Metagenome	134	N
F105913	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211577_1000181514	F038862	N/A	MSNKAWHISYLSAIVGPCTATTDDGCMAWADGNFDGFILRLLDKDNNGGELLLVIQPEIDEIQMFTLVGYCMANELNYMIKDWDDLCNEGKEEAKKTRH
Ga0211577_1000181517	F059448	AGGAG	MDIGYKTIIEVMKQGSWLTDLEVAERAKMKLDAALYYLRRLRRLGLVMSEWVHGQRVWSATL
Ga0211577_1000181527	F105913	AGGAG	MTDYNKDAVEKTIQKDKTISKKDAKLIHALLRGHQKQNF