Scaffold Ga0211676_10071887

Overview

Basic Information

• Taxon OID: 3300020463
• Scaffold ID: Ga0211676_10071887
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001057 (ERX555988-ERR599050)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2365
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_094
• Coordinates
  • Lat. (^o): -32.7806
  • Long. (^o): -87.0917
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000896	Metagenome / Metatranscriptome	845	Y
F059023	Metagenome / Metatranscriptome	134	Y
F060981	Metagenome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211676_100718873	F000896	GGAG	MTNKINMVINLSILALLIYLSVAVKQLQDKVFPDPNIMIPLIGNMDSKTELEYNIRTFLNNALTQAIEEQENQ
Ga0211676_100718875	F060981	GGAGG	MVATMTADVKIRIADLERQKIELNATIERLSYSGNHQRMLELEQEVWEIEDTIRKLMP
Ga0211676_100718876	F059023	AGGAG	MLKTIEKKIQSFVDGIGGIQRQEIVHGTLYVKLDNDRDCDFIHTEIRKFYKEFINPEGGVNMYAVGDEFAFDFVP