Scaffold Ga0211676_10000620

Overview

Basic Information

• Taxon OID: 3300020463
• Scaffold ID: Ga0211676_10000620
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001057 (ERX555988-ERR599050)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 38245
• Total Scaffold Genes: 47
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (42.55%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_094
• Coordinates
  • Lat. (^o): -32.7806
  • Long. (^o): -87.0917
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029713	Metagenome	187	Y
F033766	Metagenome	176	Y
F036656	Metagenome / Metatranscriptome	169	Y
F040580	Metagenome / Metatranscriptome	161	Y
F055658	Metagenome / Metatranscriptome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211676_1000062036	F040580	AGG	MNHKEFFNILIGNPPPQIELEIEIRKREVREMPDAVLKEICCELIKETKLQDMLIMAAMQRITETETKLLRAEMALHHHLKNLKVKKKYKTKKTLLDRFKTILSVFR
Ga0211676_1000062041	F029713	N/A	MSNDKYDSEAELKAAKRAEIERLYFEMELTNEQLLAEYKALDIKEDEKPN
Ga0211676_1000062042	F036656	N/A	MKVKNFSNIPIEFLIGSCITLSSEDDGRTIKHVCVDLEKHSIILIDDNGDGMYWESLKHASIQLGGR
Ga0211676_1000062043	F033766	AGGAGG	MSDYPYNLTAIATHLRELAQSIASKLDISEDDAWDLCLEKLDTKLIQLRNQDKDDPMS
Ga0211676_100006208	F055658	GAGG	MPTKKPDQPKTDTAKAVVSQLGVNDNPKPTQPKVVETKNGRTITYN