Scaffold Ga0211473

Basic Information
Taxon OID	3300020451 Open in IMG/M
Scaffold ID	Ga0211473_10001916 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100001778 (ERX555927-ERR598996)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020451 Open in IMG/M

Scaffold ID

Ga0211473_10001916 Open in IMG/M

Source Dataset Name

Marine microbial communities from Tara Oceans - TARA_B100001778 (ERX555927-ERR598996)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

CEA Genoscope

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	10504
Total Scaffold Genes	22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (54.55%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

10504

Total Scaffold Genes

22 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

12 (54.55%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_150
Coordinates	Lat. (^o)	35.7956	Long. (^o)	-37.0998	Alt. (m)	Depth (m)	40
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

TARA_150

Coordinates

Lat. (^o)

35.7956

Long. (^o)

-37.0998

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014155	Metagenome / Metatranscriptome	265	Y
F019665	Metagenome / Metatranscriptome	228	Y
F019666	Metagenome / Metatranscriptome	228	Y
F021511	Metagenome / Metatranscriptome	218	Y
F024331	Metagenome / Metatranscriptome	206	Y
F082815	Metagenome / Metatranscriptome	113	Y
F103426	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211473_1000191610	F021511	GGAG	MQDYTNDAVKAVMSAYSPIEVKTLLHNHDESNFVHHQTTKSIVDFYAEHNEDIHHWLLDDANAYEYYATAMAAYNKAQTLCTSEKERFEVQNEYLKDVVYIFIATVCYDLAASHDMLDMTMSEVEDYQLAKELEFAKTKLTVIDGGKK
Ga0211473_1000191613	F014155	AGGAG	MNHQRFKFYKHSTEYYKSLYNTITELEELDLTPDLQQYKSTINNNRKSKFIKPNSNTNKTHKKVG
Ga0211473_1000191614	F103426	AGGA	MYIRDKEIQNMTNIQTVSSTAFGKTLHYVTDNNLADAITTLTGKKTINDNDIIALMQLGLAVNNNTLEQLIAV
Ga0211473_1000191615	F082815	N/A	MRIFAAIERILLDRWKKMKIALKINKWPLLNMQEQRLQLKKQYLESLFRKK
Ga0211473_100019162	F024331	GGA	MRDDHPEINVDPYKYTPTKPLYMLIKVEVDKEVVYNQCQAGKYAVNHCNQLEYALADWYYPDDEQYPYIAK
Ga0211473_100019167	F019666	AGGAGG	MPHVYIPEMFVTQDEYDMIQNNLVPIDTFVANKIRQDAMFVYIQSTDCTYKRAKNYEWCDELDARIVSNDLSEIPDKRSTNSEI
Ga0211473_100019169	F019665	GGAGG	MPFNTYIDDKDMIPYLLEYDWIIWKDTWTDCPYNTYTAIKKNYLHNGNAVPMFTGEMM

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0211473_10001916

Overview

Ecosystem & Geography

Associated Families

Sequences