Scaffold Ga0211564_10007977

Overview

Basic Information

• Taxon OID: 3300020445
• Scaffold ID: Ga0211564_10007977
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001996 (ERX555961-ERR599087)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5254
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (50.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_138
• Coordinates
  • Lat. (^o): 6.3354
  • Long. (^o): -103.0345
  • Depth (m): 60

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001656	Metagenome / Metatranscriptome	656	Y
F002093	Metagenome / Metatranscriptome	594	Y
F003612	Metagenome	477	Y
F016994	Metagenome / Metatranscriptome	243	N
F022908	Metagenome / Metatranscriptome	212	Y
F106142	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211564_1000797710	F106142	N/A	MQRNFILTDVMKTGYHVDLEEFINMHSFPDQSFDMTGEYYTLHNYDLDSYDRRIAIIDYRYTNDRIHNNKEFIGELDHRCKLLHSQGFHFIKATPWES
Ga0211564_100079773	F022908	N/A	MPTHLDEAIKVILGPDSKLRDKTPRIYALPKDEHMPKGFTNLKRMRFLNHDVSAGRNIKRWLWRDYNSEIILQQPPFDKYEDQSEIFTLIRNPEERWWSGIKDMFYFMPWYTWWTNEKIMEQWPHFTRSTFRLHDVMEEVKPQHLIKCDDGLNDRIINFAKKQGLLCYGNIPHEKALRHTKPDIKKLEDKGVQTLKAWLRNNPDRQQQLDEYLEPDWQYWSKVEYQE
Ga0211564_100079774	F001656	AGGAG	MAQTPNRSTNMIRRQSFNGKGLTFVEVIFAQSITDSATTPESKDSVFDKVTKVVNRHGNLLACSYRLAAKATDNDAAEVSEITANNSIDSFQYIVEGTPGQFNANDSVGDTNIDVTATIVADAEADVEADIRAVLDSDSSNNTQHVKMRTLLPEGHNNGDANTFVGMFDQRGDA
Ga0211564_100079775	F002093	AGGAG	MAYDNTLPAGGPGNFVSPNTAHEADGTEVDFITVDYIVAMNGEVTYSSASANTAGLQLAMETIQNQGVNILGKGVLSNSNTEQTYMVRRASLDTISGTTTVAAIQAAIRAIDALTPDKITADVTGATCADRDMGDTSVGA
Ga0211564_100079776	F016994	GGAGG	MATETNTTFVAATGSLLGKELEFITVDAGEELANHQLKNETQNAIENTVRQYGNIVGAGPLFDTNASRTYIVEGTDMFVGSPATSGTGAFTFTESGADGSSVGTLLAALKALGTIDSIDLNDSGTTAKIENLEL
Ga0211564_100079778	F003612	N/A	MATPNNFKVTTAIGETDNYIGADISFYHITLKDNGASAVDIRTELGYDETVHNVIRAVLDRGTMVHQRIDNAATGRIDIAMERAGWTAATLQTAIRDLGATVGVNDKDLRGTVVTETELKLDNS