Scaffold Ga0211564_10005057

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211564_10005057

Scaffold Ga0211564_10005057

Overview

Basic Information
Taxon OID	3300020445 Open in IMG/M
Scaffold ID	Ga0211564_10005057 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100001996 (ERX555961-ERR599087)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	6560
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (26.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location Name	TARA_138
Coordinates	Lat. (^o)	6.3354	Long. (^o)	-103.0345	Alt. (m)		Depth (m)	60
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F084340	Metagenome / Metatranscriptome	112	Y
F095604	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211564_1000505711	F084340	GGAG	LTNTNINITETEHPAALHQQDVNACIHHIRDAVVDYVESEVLTPGEFVNCVRTALADSINYHSNRAKLLKDAQDLLTNNITDKEFVQQQL
Ga0211564_1000505712	F095604	N/A	MTQEADEAARALRKLQDLTNKYSNLEMNGDELKQSISERINATEELKDIIARATQAKKDRESKLQ

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