Scaffold Ga0211564_10000009

Overview

Basic Information

• Taxon OID: 3300020445
• Scaffold ID: Ga0211564_10000009
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001996 (ERX555961-ERR599087)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 95515
• Total Scaffold Genes: 120
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 64 (53.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_138
• Coordinates
  • Lat. (^o): 6.3354
  • Long. (^o): -103.0345
  • Depth (m): 60

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032441	Metagenome / Metatranscriptome	180	Y
F040327	Metagenome	162	Y
F057664	Metagenome / Metatranscriptome	136	N
F096039	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211564_10000009103	F096039	N/A	MTFNDGDLIAELLTITAELGGKMERRDVYESTGRQYKKIVIEYDSKEWKRNDKL
Ga0211564_1000000937	F057664	N/A	MPFSETEQYAVDTFNDLQNQVKAFGLHNFDREERLLFKKGRQLLEDAKKAASAKKTPYTDEETECLLNAYLLNQADMEKARAVFFKFFPETKHSTASVWQKISRIRTLDNQFPDDTKWDTDQQIRGICRQYNSYHSVKRFAV
Ga0211564_1000000961	F032441	N/A	MSIIIYQDHIEILEEEKAELQKEVLSLRRKVSYYQTILEEDEDNEWGL
Ga0211564_1000000981	F040327	N/A	MKYKITEPVKSFNGISVFLLGGALGPYYMKDWTPEQIKEYEDWVSKNT