Scaffold Ga0211578_10002996

Overview

Basic Information

• Taxon OID: 3300020444
• Scaffold ID: Ga0211578_10002996
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001245 (ERX556114-ERR598980)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7509
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (64.29%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_132
• Coordinates
  • Lat. (^o): 31.5319
  • Long. (^o): -159.0668
  • Depth (m): 550

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000704	Metagenome	928	Y
F001606	Metagenome	664	N
F001922	Metagenome	617	Y
F003616	Metagenome	477	Y
F014859	Metagenome	259	N
F089041	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211578_100029961	F089041	N/A	WYIRYFKRGKCVIMPEELATKIRNGQIRINSQEKLHKTFNLNISEFALLEQLKTKWHFSDYSETVLYCIWLASVSDGIETV
Ga0211578_1000299610	F001922	AGG	MVIQKLLIEEGIKRGLKESQKYSVSVLGYDFIGLVSRLSVFFIMAFLINSYFIATIQGGIWLNSLGGFFNMKFPTTLPEWLTQLFTTGYKGFTFWNLVTTISVLIVIVEAMQYDRMLKEKGEKPNVTSLAVFGVIALGLSLITFPTIIQKLKERRILNAP
Ga0211578_1000299611	F014859	GAG	LVNELIPPEIIPIIWFAGITISVYFFFRKFSDVIKEKIKHTTRKNKIVDTEETGNQIDNLINNAPRILDEVNKEITAQRAQGVTDEQMKGLLQKKQLLELGTSIPPEVYNIVAKPLVKKLIGFVGKI
Ga0211578_1000299612	F000704	AGGTGG	MPHDEILPSRVKAVITYDISNYGEDLFLPFTDVGLTETALTYSGVAMTRDLENSNQPMDVFPAVFSDTDSGLLLNEGNDTAFSQTYTFLPDMTAIIYAIHLNIPAALTCSAYTSGGLNVGALHIKITERSTDNRLLYENTFQSGAATLSATGTSLHWFTRDIVETIQVTKGNPIDILIELVTVVTGTNTRQEGYAPVAPYLKTAVMKRFTPAGIALHLHADLSHADGVLKYKKSRVSMLG
Ga0211578_1000299613	F001606	GAGG	MTYGYDDVTTTSLGTGVAETQLNGGTSLSAPDPAHGFLACIPYQSESAAFTVDESLLTAFRIQSDDVAVEPKKFVLPNVNTGDASFTSVAAPALLAYPINTPLAGGEHLNFYGQPLVANTVAPICGATVIYDTDGTNDAESYYTRPTNESAAATAVDTRTEGGSMTIQGGNEIRGLYTVVSGGTATASQHDVGYSEFLSPDFNTSMPYRVAIQPTYTGLGSNANAVTGGGGLMQYNMPRGKGIPLANNVTITNYYTNRDARTGASNFINFVRYTKN
Ga0211578_100029967	F003616	AGGA	MIWSEKLGKEIGTYNSLGGLRINPKPFIHSTQNTVVTCRICKGVGCNAITHESGLVTLNPCVLCKGKKRRSNRIG