Scaffold Ga0211578_10000397

Overview

Basic Information

• Taxon OID: 3300020444
• Scaffold ID: Ga0211578_10000397
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001245 (ERX556114-ERR598980)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21255
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_132
• Coordinates
  • Lat. (^o): 31.5319
  • Long. (^o): -159.0668
  • Depth (m): 550

Associated Families

Family	Category	Number of Sequences	3D Structure?
F052655	Metagenome / Metatranscriptome	142	Y
F056674	Metagenome / Metatranscriptome	137	Y
F063766	Metagenome	129	Y
F105355	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211578_1000039711	F052655	AGGAG	MTVLILVAGLAFGMFTYEPSWFDMKPHYYHMTYNNKYDCERARETVKDKSTVCTDKHEMYKTK
Ga0211578_1000039712	F105355	AGGGGG	MEALNSCDNSDKLTLLLNIRQGTQSTTYSVSNLPDWYDMLAIFAIYGIVAMTIFYIGLWIGSRYII
Ga0211578_1000039713	F063766	AGGAGG	MALNKQKKIEYIRHVLEQVVNDSIDGKEDSILIEVALDFIEEIGKGGSDGGT
Ga0211578_1000039714	F056674	AGGAG	MNKEFEDVTRGISRFKQHGKYQMSLSGLIKALQKERVGLLVKITDKHYPGRSHSYFGYHTDLAFEPTEEPITVAKFLKECEDCIGKSFITADHFDEFYKDHIMQINASLWISTLGQASQKGIVDLVPTDGYIKLVTQHIEKEEDGSE