Scaffold Ga0211559_10009520

Overview

Basic Information

• Taxon OID: 3300020442
• Scaffold ID: Ga0211559_10009520
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100002019 (ERX556121-ERR599162)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5071
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (46.15%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_140
• Coordinates
  • Lat. (^o): 7.416
  • Long. (^o): 79.3102
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018738	Metagenome / Metatranscriptome	233	Y
F030784	Metagenome / Metatranscriptome	184	Y
F033075	Metagenome	178	Y
F103426	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211559_1000952012	F103426	AGGAG	MTNIKTVSNIAFGRQLHYVLDDNYADAITQLTGKKTINDKDIVALMQLGLAVNNNTLADVVAS
Ga0211559_100095202	F018738	N/A	MTPLYRYYCADTDCGKHFCLMASDDIEAAYRAESMAKEWYQTTLKDVYLDKHANPHRRYRPYDKEILSQSME
Ga0211559_100095208	F030784	GGAGG	MFNTYIEDKAMIPVLLGYDWIIMKDTWTDCPVETYFALKKRVIHNGNAKPLS
Ga0211559_100095209	F033075	GGAG	MTKNNPMQDAYEHILHAYNPLHIKDILIHGASRKATKHKSKDDIITYYANHNEGIHHNLLDAKPKYYQHYLYMQLCYAESNRDQDSQYDFIRDVVWLYIDAVADELGDEYKLHNKPRKEIEDEVLAIDLEFRKQQLQVIDGGKS