Scaffold Ga0211518_10074547

Overview

Basic Information

• Taxon OID: 3300020440
• Scaffold ID: Ga0211518_10074547
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_E500000178 (ERX555952-ERR599043)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1857
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_025
• Coordinates
  • Lat. (^o): 39.3599
  • Long. (^o): 19.4084
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026851	Metagenome	196	Y
F081221	Metagenome	114	N
F087026	Metagenome	110	Y
F101070	Metagenome	102	Y
F105104	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211518_100745472	F026851	AGGA	MTKQQLQQLLKDPVNMTPLEHAEVGRMKQAYFSAVAQETEAYISAKEAYDDAKEFMDLQDPGEREVLMQLLKNMRDCEHNMTIIATELEVHFGISA
Ga0211518_100745473	F105104	AGGAG	MLHHIYYTNPAGADNYMIVPFDEIKGTVAFLESLDYEVVAYWPIQEEA
Ga0211518_100745474	F081221	AGGA	MDDILHALYNILILATGFAAVICASLTAVALINLVSSSMLTYRDDKLLLAWALPSGLFFSGLLMVMLGWT
Ga0211518_100745475	F087026	AGGAGG	MERGEWKAGDLVRVESTQKTGWGDECHNHLVLVLRMYKRKHTQHYPLTAELEAGTKEKDVVYEVLRDDGKYVKLGLKDYSYPNLRLTNRLVQRSCAEEET
Ga0211518_100745476	F101070	AGGAGG	VGINKIRVDPLEMEAGDLIVTDGRMSLEVGDVLLVVRRLQGHGKRHPFVDGRRVGNQWRLLSRLGVIDMWVDPHASWVVQVVKGQKKTAT