Scaffold Ga0211558_10001304

Overview

Basic Information

• Taxon OID: 3300020439
• Scaffold ID: Ga0211558_10001304
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001939 (ERX556062-ERR599029)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13577
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (28.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_141
• Coordinates
  • Lat. (^o): 9.846
  • Long. (^o): 80.0607
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006331	Metagenome / Metatranscriptome	376	N
F010465	Metagenome	303	Y
F054687	Metagenome / Metatranscriptome	139	Y
F073285	Metagenome	120	Y
F091843	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211558_1000130415	F073285	N/A	MKLKYLLIGSSHMDEIVKIFKANVTMDVINEHLKSYLSEIDCLQDLTDQFDELQRQLKDEGYEHDTFDVIEYYLCEYADSFVTLQETELL
Ga0211558_1000130416	F091843	AGGA	MSVTEYLTDHNGNQVAFFYYIDSERFRTCPQLVWQCRDYPNFSGTCASKSEFIECAKQVLKELKKVPVCKDCGLTSAKMEAQSTCPDCLTETNTNK
Ga0211558_1000130420	F054687	N/A	MEAIKSISVLNNTNPEHLETLDEPSLQILINHYLSVAEKLPDNLSVRERLVELQQELLNRTSYSSIEGVIRQTTDNPIK
Ga0211558_1000130422	F010465	GGA	MKTETLLDPIDMIEELMFHMFNNDMNRELDGRWLDLYLSLQLYKEHLEKLEDE
Ga0211558_1000130425	F006331	N/A	MSDTRGHVWRMREWGRTQYRNRQAKLRAEGESSKTESAKRMLRVMSPRLGKRVEDFMYTFGGNTEHTTPLFLTFILDMCPYQVSVLAIQTFLDNLQFNLPVGRMAYKIGKAFENQARWDKALETMHPNKLDLLALDDRSKAMKLKQFYQYEEERFTLWDS