Scaffold Ga0211576_10022195

Overview

Basic Information

• Taxon OID: 3300020438
• Scaffold ID: Ga0211576_10022195
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3823
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (83.33%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_133
• Coordinates
  • Lat. (^o): 35.4118
  • Long. (^o): -127.7122
  • Depth (m): 45

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010950	Metagenome	297	Y
F018286	Metagenome	236	Y
F030886	Metagenome	184	Y
F053549	Metagenome	141	Y
F057352	Metagenome	136	Y
F101902	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211576_1002219514	F018286	GGAGG	MKTLTTFVLIGVIDSHDGVFATVELNTNPASNGGSATAVMPVSAFPCEVSEGKVFYVVKLHENQDAVIICEDKED
Ga0211576_1002219516	F030886	AGGA	MSYHGNPPPDYNKTGIAVVNPLIRIERKLQEVRDVLDNISDASILTAIDLKIKLQKVLDD
Ga0211576_100221953	F101902	GAGG	MRVGNLVKRRDDHAHHGIVVEVGPQETAIDHSATVAKVQWNDGDLTCEFIKILEVVSER
Ga0211576_100221956	F053549	AGGTGG	VKVGDLVKWESVLNDSMDHHRQDHGIVVKMSRTGHDSESAQVLFTDGDLWWLDTQKLVVVNEAG
Ga0211576_100221957	F010950	N/A	MMNIWVVRQTCLYDNESYVSSHLTEKGALITAIKIVREDLCDGFDEDELEDMRPDLPHNHEEDLMQYNSEQLRGIIEDWWEYSWEINEQAQYQIYETQVEA
Ga0211576_100221958	F057352	AGGAG	MKLWVLHGTYENELFTSIHLTEKGCALAAIADIMDFLSVSDEESALQVINDCYAYTGTDGKQTEAFEWDHDKLKEMSSKDLWKIFADWTETCWERMSDRSYYIDATPQMVQG